Showing : software error • reset
1
vote
11
replies
8.9k
views
Unable to install packages
software error deseq2
updated 6.6 years ago by • 0 • written 6.6 years ago by ▴ 10
2
votes
4
replies
1.0k
views
Scanf error in biomaRt when field is missing
software error biomaRt
updated 6.6 years ago by ★ 6.6k • written 6.6 years ago by • 0
0
votes
0
replies
2.4k
views
Error in contrasts<-(tmp, value = contr.funs[1 + isOF[nn]]) : contrasts can be applied only to factors with 2 or more levels
software error ballgown rstudio R stattest
6.6 years ago fatimarasool135 • 0
1
vote
2
replies
1.3k
views
Unable to load mzR due to built on Rcpp version (1.0.0)
software error
updated 6.6 years ago by 4.2k • written 6.6 years ago by ▴ 10
1
vote
1
reply
570
views
Error when retrieving gene name data using biomaRt
software error annotation Biomart
updated 6.6 years ago by ★ 6.6k • written 6.6 years ago by • 0
0
votes
3
replies
1.6k
views
Possibly bug in newSeqExpressionSet function
software error EDASeq
6.6 years ago jens • 0
0
votes
4
replies
2.4k
views
ChemmineOB installation failed
software error
updated 6.6 years ago by 68k • written 6.6 years ago by • 0
2
votes
6
replies
2.7k
views
featurecounts Rsubread ERROR on exon_id
R error software error Rsubread featurecounts
updated 6.6 years ago by ★ 3.6k • written 6.6 years ago by • 0
2
votes
2
replies
1.1k
views
Boxplot object (from the RNASeqGeneEdgeRQL workflow) returning a blank file...
boxplot software error
updated 6.6 years ago by 53k • written 6.6 years ago by ▴ 60
0
votes
0
replies
1.1k
views
predictCoding warning message: serious or not?
software error annotation VariantAnnotation
updated 6.6 years ago by 4.2k • written 6.6 years ago by • 0
2
votes
4
replies
2.3k
views
unable to update packages when I am working on HPC
software error
updated 6.6 years ago by 53k • written 6.6 years ago by • 0
7
votes
14
replies
4.5k
views
Issue setting up BiocManager due to mgcv / clang?
software error
updated 6.7 years ago by 25k • written 6.7 years ago by • 0
2
votes
1
reply
1.8k
views
mzR unable to open uncorrupted mzXML file
software error mzR xcms
6.7 years ago abrsoule ▴ 30
0
votes
2
replies
2.9k
views
liftover probe annotation from hg19 to hg38 for methylation array data using minfi (EPIC methylation array data)
annotation probe software error EPIC methylation array
6.7 years ago brendan.miller • 0
0
votes
2
replies
519
views
DelayedArray package error
software error
updated 6.7 years ago by ★ 29k • written 6.7 years ago by • 0
2
votes
4
replies
1.1k
views
I can't import my gff file by `importTransprits()`,when I worked with SGSeq.
software error annotation
updated 6.7 years ago by ▴ 260 • written 6.7 years ago by • 0
0
votes
2
replies
1.9k
views
msa error with cmd execution
software error
6.7 years ago albizu.m • 0
0
votes
2
replies
1.1k
views
Problem in installing
software error deseq2
updated 6.7 years ago by 25k • written 6.7 years ago by ▴ 30
1
vote
7
replies
2.3k
views
Add annotation, biomaRt installation
software error annotation go
updated 6.7 years ago by ★ 6.6k • written 6.7 years ago by ▴ 10
1
vote
2
replies
1.1k
views
Errors installing "shinyTANDEM" package
software error proteomics
updated 6.7 years ago by 1.6k • written 6.7 years ago by • 0
2
votes
3
replies
2.2k
views
Error in VCF parsing with VariantAnnotation
software error VariantAnnotation ensemblVEP
updated 6.7 years ago by ★ 6.8k • written 6.7 years ago by ▴ 20
0
votes
1
reply
1.6k
views
Problem in using covplot ChIPseeker
ChIPseeker software error
6.7 years ago vasudha.sharma • 0
0
votes
3
replies
3.8k
views
Bioconductor offline installation
software error
updated 6.7 years ago by 25k • written 6.7 years ago by • 0
0
votes
2
replies
1.0k
views
Warning for "readVcfAsVRanges"
software error
updated 6.7 years ago by 25k • written 6.7 years ago by ▴ 110
1
vote
2
replies
1.0k
views
Problem with ChIPQC
software error
6.7 years ago lionel.ferrato ▴ 10
0
votes
0
replies
746
views
Error while uploading shinyApp - R Shiny
software error
6.7 years ago sqz986536 • 0
2
votes
5
replies
3.1k
views
ensemblVEP: "Ensembl VEP is not installed in your path."
software error ensemblVEP
updated 6.7 years ago by 25k • written 6.7 years ago by ▴ 10
1
vote
1
reply
2.0k
views
Simple csv import error
software error
updated 6.7 years ago by ★ 1.4k • written 6.7 years ago by • 0
0
votes
0
replies
975
views
maftools: frameshift substitution classification annovarToMaf
software error annotation
6.7 years ago ivan.molineris • 0
0
votes
1
reply
1.1k
views
ShortRead Error: unexpected empty line
software error
updated 6.7 years ago by 25k • written 6.7 years ago by • 0
0
votes
1
reply
756
views
biomaRt invalid results
software error
6.7 years ago NicolasP • 0
0
votes
2
replies
846
views
Rtracklayer export.bedGraph trackLayer color format unable to read by UCSC genome browser
software error
6.7 years ago tanas80 • 0
2
votes
1
reply
2.2k
views
Installing BiocParallel package on R.3.4.4
software error
updated 6.7 years ago by 25k • written 6.7 years ago by ▴ 10
1
vote
3
replies
1.1k
views
I can't install the package "matchprobes"
software error probe
updated 6.7 years ago by 68k • written 6.7 years ago by • 0
2
votes
4
replies
5.0k
views
How to reconfigure Jupyter Notebook to locate specific version of R?
deseq2 software error
6.7 years ago david.wheeler7 ▴ 20
1
vote
8
replies
2.6k
views
How to read variants into R from large dataset using VariantAnnotation
software error
updated 6.8 years ago by 25k • written 6.8 years ago by • 0
0
votes
1
reply
1.7k
views
glm.fit problem with maSigPro
software error maSigPro Nueda RNAseq
updated 6.8 years ago by 68k • written 6.8 years ago by • 0
0
votes
1
reply
1.5k
views
MCLUST: finding the best number of Gaussian components to fit my data
software error microarray probe annotation
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
0
votes
0
replies
818
views
Importing Wiff file to R software
software error
6.8 years ago khoranim • 0
0
votes
1
reply
1.4k
views
How to change the siez of lables in heatmap
software error go dose heatplot gseGo
6.8 years ago aboumarshal • 0
1
vote
1
reply
1.3k
views
standardChromosomes says EOF within quoted string
software error
updated 6.8 years ago by 25k • written 6.8 years ago by ▴ 10
1
vote
2
replies
1.6k
views
Ballgown Error .null(pData) | class(pData) == "data.frame" are not all TRUE
software error ballgown
updated 6.8 years ago by ▴ 210 • written 6.8 years ago by • 0
0
votes
2
replies
889
views
biomaRt bug report
software error biomaRt
updated 6.8 years ago by ★ 6.6k • written 6.8 years ago by • 0
0
votes
0
replies
996
views
unwanted linebreaks using write.table with a dataframe created via the myvariant.info r package
annotation software error myvariant
updated 6.8 years ago by 4.2k • written 6.8 years ago by • 0
0
votes
4
replies
3.5k
views
biomaRt: Unexpected format to the list of available marts.
software error biomaRt
6.8 years ago frank007 • 0
0
votes
0
replies
945
views
TPP error message " The names of the data objects in 'data' differ from the names given in the Experiment column of 'configTable'."
software error TPP
updated 6.9 years ago by 4.2k • written 6.9 years ago by • 0
0
votes
1
reply
1.6k
views
consulting about the FELLA package
software error FELLA
updated 6.9 years ago by ▴ 20 • written 6.9 years ago by • 0
0
votes
1
reply
874
views
signeR errors when assessing for variant signatures
software error
updated 6.9 years ago by ▴ 10 • written 6.9 years ago by • 0
2
votes
4
replies
3.7k
views
Problem installing GenomicRanges package
software error
6.9 years ago aigofaith ▴ 10
0
votes
2
replies
1.3k
views
VCF files incompatible with signeR
software error signeR
6.9 years ago Dan • 0
704 results • Page 6 of 15
Recent ...
Replies
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much, @ATpoint and @kevin , for your valuable insights. I have carefully checked all your suggestions. First, I examined th…
Answer: Finding duplicated entries in GRangesList by Kevin Blighe ★ 4.0k
The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…
Answer: DESeq2 on non-RNASeq counts data by Kevin Blighe ★ 4.0k
The use of DESeq2 for count data from artificial sequences is acceptable, as the program models counts via a negative binomial distribution…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hello Rui Tang, The buffer overflow error in featureCounts that you encountered is likely due to a compatibility issue between the Subre…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
The issue that you describe with the tumor mutational burden (TMB) plots appearing linear and lacking consistent TMB values across samples …
Votes
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
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